Oncology NGS Report v.2.0
For research use onlySample: syn3-normal
Project: bcbio postproc dream chr21, hg19
Patient: unknown
Coverage interval: regional,
total size 1678843 bp
Mutations
No variants detected.
Actionable genes - variants and larger alterations of interest
No variations found in actionable genes.
Circos plot
Circos plot displays the following genomic data: CNVs, SNPs and structural variants. The outer ring indicates the chromosomes and distances in Mb. The next ring indicates the copy number information. Color scheme correspond to Seq2C plot colors.
The innermost ring represents CNV according to Seq2C: amplifications and deletions in key genes, amplifications and deletions in other genes. Vertical offset represents the log ratio of the gene coverage.
SNP track represents the allele frequency of the SNPs (from 0 to 100%), classes are represented by color: known, likely, unknown (in key genes); known, likely, unknown (in other genes). Vertical offset represents allele frequency of the SNPs (from 0 to 100%).
Archs represent chromosomal rearrangements.
Click on the chromosome header to zoom into a chromosome.
Compare all samples
Seq2C log2 ratios (CNV)
No Seq2C events found.
Coverage analysis for 300 key genes
Height indicates gene average coverage, green means that > 90% gene is covered at 37x (half of global average coverage). More detailed plot for each gene is expanded by clicking on the corresponding point.
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